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1. Caprera A, Cosentino C, Viotti A, Stella A, Milanesi L, Lazzari B ESTuber db: a tool for Tuber borchii EST sequence management Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis Abstract: Missing |
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2. Caprera A, Lazzari B, Vecchietti A, Stella A, Milanesi L, Pozzi C The ESTree db as an engine for peach EST related information retrieval Meeting: BITS 2005 - Year: 2005 Full text in a new tab Topic: Unspecified Abstract: The ESTree db represents a collection of Prunus persica expressed sequenced tags (ESTs) and is intended as a resource for peach functional genomics. With this aim, the db has been structured to be a repository of information and links related to the sequences and to provide a userfriendly interface to allow easy querying of all the db fields. Within the month of March 2005 the third release of ESTree will be online and will include 18630 sequences, encompassing 8 libraries at different peach fruit developmental stages. A second version of the db, including only the 6155 sequences produced by the FPTP-CERSA group will also be online. The major data resources that are included in the ESTree db are: annotation both with BLASTx versus the NCBI nr database and with BLASTx versus the GO viridiplantae subset of sp-trembl; contig assembly and display; SNP analysis with AutoSNP and links to the KEGG metabolic pathways and the enzyme entries of NiceZyme (Expasy). Gene Ontology statistics are also presented both for the whole set of sequences that are included in the db and for library-specific subsets. |
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3. Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C Version VI of the ESTree db: an improved tool for peach transcriptome analysis Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Gene expression and system biology Abstract: Missing |
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4. Lazzari B, Milanesi L, Stella A, Caprera A, Bianchi F, Vecchietti A, Pozzi C ESTree DB: a Tool for Peach Functional Genomics Meeting: BITS 2004 - Year: 2004 Full text in a new tab Topic: Unspecified Abstract: A collection of about 8000 Expressed Sequence Tags (EST) sequences has been prepared starting from clones belonging to four cDNA peach libraries. Libraries have been prepared from Prunus persica mesocarps at four different developmental stages with the aim to collect data for deep investigation of the maturation process at the molecular level. A fully automated pipeline (ESTree DB) has been prepared to process EST sequences using public software integrated by in-house developed Perl scripts and data have been collected in a MySQL database called ESTree available at this URL: http://www.itb.cnr.it/ESTree. These data are produced in the frame of the activities of the National Consortium for Peach Genomics (ESTree), involving also the Universities of Padova, Udine and other research Institutions. |